Richard Harris (32)
Auteur de Rigor Mortis: How Sloppy Science Creates Worthless Cures, Crushes Hope, and Wastes Billions
Pour les autres auteurs qui s'appellent Richard Harris, voyez la page de désambigüisation.
A propos de l'auteur
Richard Harris is one of the nation's most celebrated science journalists, covering science, medicine, and the environment for more than thirty years for NPR, and the winner of more than a dozen national awards. He lives in Washington, DC.
Œuvres de Richard Harris
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- Autres noms
- Harris, Richard F.
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- male
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Statistiques
- Œuvres
- 1
- Membres
- 99
- Popularité
- #191,538
- Évaluation
- 4.1
- Critiques
- 2
- ISBN
- 256
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- 8
Even if mice are good models (which they often aren’t) it turns out that cage position can affect the outcome of an experiment, given mice’s distaste for bright lights and open spaces. Harris quotes a scientist: “As you move from the bottom of the rack to the top of the rack, the animals are more anxious, more stressed-out, and more immune suppressed.” Also, “Mice are so afraid of [human] males that it actually induces analgesia,” numbing pain and screwing up studies. So mouse study results can vary hugely from lab to lab. But the bigger problem may be testing in mice at all, or testing only in one strain of animal. If you tested a new drug on white women aged 35 who all lived in one town with identical homes, husbands, diets, thermostats, and grandfathers, “that would instantly be recognized as a terrible experiment, ‘but that’s exactly how we do mouse work.’”
Harris is only moderately optimistic about small-molecule innovations. He quotes a scientist who argues that “evolution has created so many redundant systems that targeting a single pathway in a complex network will rarely work…. ‘We have evolved seventeen different biological mechanisms to avoid starving to death. Drugging one of those mechanisms isn’t going to do anything!’”
Cell experiments are troubling too, even when they’re properly identified. “The very act of propagating cells in the laboratory changes them profoundly,” and atmospheric oxygen in particular is really important because a lot of regulatory factors that affect tumor growth are oxygen regulated. “In fact, cell lines derived from all sorts of cancers end up looking much more like one another than they do the original tumors from which they came… ‘Some people say that HeLa is a new species,’ [a scientist] told me. ‘… The chromosomes are all rearranged… [I]t has made all these changes to adapt’ to the environment where it now makes its home.” Precision medicine can’t be developed until we deal with the fact that even molecules in a living body change when surgeons cut off the blood supply to the tissue they’re going to remove.
Here are a couple of statistical twists I hadn’t thought about, too. If you set your p-value for significance at 0.05, then there’s almost a 50% chance that running the experiment again would give you a higher value, and almost a 50% chance that you’d get a lower one, and therefore be deemed insignificant. To have a 95% chance that an experiment run a second time would still be statistically significan, a p-value of 0.005 would be required. This can often be done, if the phenomenon at issue is real, by increasing the sample size by 60%--expensive, but Harris argues pretty persuasively that it would be worth the costs. Another point: scientists too often confuse exploratory research with confirmatory research. Statistical tests used to confirm or disconfirm a hypothesis don’t work if you don’t have a hypothesis and are just fishing around for anything interesting or unexpected in the data. “It’s fine to report those findings as unexpected and exciting, but it’s just plain wrong to recast your results as a new hypothesis backed by evidence.”
All is not lost. A federal law requiring scientists doing drug studies to declare endpoints in advance seems to have had significant effects: of 30 big studies done before the law, 57% showed a benefit. But after, only 8% confirmed the preannounced hypothesis.
Reproducibility is the key. Although some responses to the crisis point out that failed attempts to reproduce certain results may be because the original lab did important things differently, but that’s part of the point: “if any tiny detail can derail an experiment, just how robust is the result? Nobody cares about an experiment that … requires conditions so exquisite that only the lab where it originated can repeat it.” Harris advocates (1) blinding (amazingly, not universal); (2) repeating basic experiments; (3) presenting all results rather than cherry-picking; (4) using positive and negative controls—running experiments that should succeed and fail, respectively, if the hypothesis is correct; (5) careful validation of the ingredients (which turns out to be a much bigger problem than I knew; for example, did you know that lots of cell lines labeled otherwise are actually HeLa, which is very good at taking over, and between 18-36% of cell experiments used misidentified cell lines?); and (6) using the right statistical tests.… (plus d'informations)